HPC: managed clusters
The Science Faculty has several High Performance Computing-facilities available.
Thor
From:
- 20141203
Main Users:
- Debye Institute - Soft Condensed Matter (Marjolein Dijkstra)
Location:
Resources:
- 1 master/storage node (24 cores)
- 9 compute nodes (9*48 = 432 cores) remain.
- 2.66 GB /core
- 11 TB
OS
- CentOS 6.6 (nodes 6.5)
Clustermanager:
- Rocks 6.1.1
Queue-manager:
Nano
From:
- 20121214 [head,01..20] ; 20141216 [21..28]
Main Users:
- Debye Institute - Soft Condensed Matter (Marijn van Huis)
Location:
Resources:
- 1 master/storage node (8 cores)
- 28 compute nodes (28*16 = 448 cores; 20*32GB (2GB/core) + 8*64 (4GB/core) = 1152 GB)
- 72 TB
OS:
- Scientific Linux 6.5
ClusterManager:
Queues:
- all.q, Q2, Q4, stud.q
Queue-manager:
Hera
From:
- 2015-12-17 [Head, 01..20] upto 2020-11-20 [89..92]
Main Users:
- Sectie Nanophotonics van Debye Institute
Location:
Resources:
- 1 master/storage node (8 cores; 32 GB; 37 TB)
- 36 compute nodes (16 cores; 64 GB; 1 TB) [A]
- 24 compute nodes (20 cores; 64 GB; 1 TB) [B]
- 16 compute nodes (24 cores; 96 GB; 480G SSD) [C]
- 8 compute nodes (32 cores: 96 GB; 480G SSD) [D]
- 4 compute nodes (32 cores: 96 GB; 480G SSD) [E]
- (= 1824 cores; 3.5 GB/core)
OS:
- CentOS 7.2 (0,A,B), 7.6 (C,D), 7.9(E))
ClusterManager:
- Bright Cluster Manager 7.1 {A,B,C,D}
- Ansible {E}
Queues:
- all.q
- lammps.q
Queue-manager:
Obi1
From:
- 2014-02-14
Main Users:
- Debye Institute - Computational Chemistry
Co-Administration:
- Jaap Louwen, Ellen Sterk
Location:
Resources:
- 1 master/storage node (8 cores; 64 GB; 15 TB)
- 10 compute nodes (10*16 cores=160 cores; 320 GB - 2G/core)
OS:
- Scientific Linux 6.9
Clustermanager
Queues:
- all.q ; long.q ; small.q ; test.q
Queue-manager:
Gemini
From:
- 2016-11-21 {35,36}
- 2019-11-30 {37,38}
- 2020-12-01 {39}
- 2022-01-27 {40,41,42}
Main Users:
- All staff and students of science faculty (* some externals *)
Location:
- BBG-045 (BS35)
- NL-DC Almere (BS36..42)
Resources:
- Headnode (256 GB - 64 HT-cores) - 2TB scratch)
- 1 nodes (256 G - 32 cores - 8G/core - 2TB scratch)
- 2 nodes (192 G - 48 cores - 4GB/core - 2TB scratch)
- 1 node (256 GB - 48 cores - 5GB/core - 12TB scratch)
- 3 nodes (256 G - 48 cores - 5GB/core - 2 TB SSD scratch)
OS:
- Scientific Linux 7.9
Queue-manager:
Queues:
- all.q ; long.q ; test.q ; itf.q
More info:
Angstrom
From:
- 2017-12-22
Main Users:
- Biomolecular Sciences - Cryo/EM
Location:
Resources:
- 1 master node
- 10 genuine nodes (a 20 cores; 128 GB RAM, 250 GB disk)
- 3 GPU nodes (72 cores & 57.344 CUDA cores)
- 2 storage nodes (520 TB)
- 1 backup server (750 TB)
OS:
- CentOS 7.4
Clustermanager:
Queue-manager:
More info:
Pico
From:
- 2020-01-13
Main Users:
- Debye Institute - Soft Condensed Matter (Marijn van Huis)
Location:
Resources:
- 1 master/storage node (40 cores; 192 GB RAM; 100 TB disk)
- 12 nodes (40 cores; 96 GB RAM, 1 TB disk)
OS:
- CentOS 7.7
Clustermanager:
Queue-manager:
More info:
Helix
From:
- 2020-01-14
Main Users:
- Biomolecular Sciences - Cryo/EM
Location:
Resources:
- 1 master node
- 3 GPU nodes (72 cores & 57.344 cuda cores)
- 2 Visualisation Servers
- 1 storage nodes (520 TB)
- 1 backup server (750 TB)
OS:
- CentOS 7.7
Clustermanager:
Queue-manager:
More info:
Lorenz
From:
- 20210824
Main Users:
- IMAU
Location:
Resources:
- 1 master/storage node (40 cores; 192 GB RAM; 2* 120 TB disk)
- 6 nodes (32 cores; 96 GB RAM, 480 G OS, 4 TB scratch)
OS:
- AlmaLinux 8.5
Clustermanager:
Queue-manager:
Odin
From:
- 20220311
Main Users:
- Debye Institute for Nanomaterials Science - Laura Filion
Location:
Resources:
- 1 master/storage node (40 cores; 192 GB RAM; 2* 120 TB disk)
- 6 nodes (32 cores; 96 GB RAM, 1 TB disk)
OS:
- AlmaLinux 8.5
Clustermanager:
Queue-manager:
Aenetone
From:
- 20220304
Main Users:
- Debye Institute - Nong Artrith
Location:
Resources:
- 1 master/storage node (128 cores (MT); 256 GB RAM; 120 TB disk)
- 11 nodes (64 cores; 256 GB RAM, 1 TB disk)
- 2 nodes (64 cores; 512 GB RAM, 1 TB disk)
OS:
- AlmaLinux 8.5
Clustermanager:
Queue-manager:
Laura
From:
- 2012-06-15
Main Users:
- CS Department(Geert-Jan Giezeman)
Location:
Resources:
- 1 node (32 cores - 64 G - 2G/core)
OS
- Scientific Linux 7.9
Queue manager:
- none
Markov
(= clue.science.uu.nl) From:
- 20141211
Main Users:
- IMAU
Location:
Resources:
- 1 compute node
- 48 cores ; 64 GB (= 1.33 G/core)
- linked to : netapp
OS:
- Scientific Linux 7.9
ClusterManager:
- none
Queuemanager:
More info: